SUPT4H1

Protein-coding gene in the species Homo sapiens

SUPT4H1

Available structures

PDB

Ortholog search: PDBe RCSB

List of PDB id codes
3H7H

Identifiers

Aliases

SUPT4H1, SPT4, SPT4H, SUPT4H, Supt4a, SPT4 homolog, DSIF elongation factor subunit

External IDs

OMIM: 603555; MGI: 107416; HomoloGene: 68303; GeneCards: SUPT4H1; OMA:SUPT4H1 - orthologs

Gene location (Mouse)

Chr.	Chromosome 11 (mouse)^[1]

Band	11 C\|11 52.2 cM	Start	87,628,378 bp^[1]
Band	11 C\|11 52.2 cM	End	87,634,449 bp^[1]

RNA expression pattern

Bgee

Human

Mouse (ortholog)

Top expressed in

monocyte

blood

Achilles tendon

bone marrow

stromal cell of endometrium

lymph node

islet of Langerhans

ganglionic eminence

bone marrow cells

right adrenal gland

Top expressed in

granulocyte

morula

embryo

embryo

yolk sac

ventricular zone

right kidney

neural layer of retina

dentate gyrus of hippocampal formation granule cell

More reference expression data

BioGPS

n/a

Gene ontology
Molecular function	DNA-binding transcription factor activity zinc ion binding metal ion binding protein binding protein heterodimerization activity RNA polymerase II complex binding single-stranded RNA binding
Cellular component	nucleoplasm DSIF complex nucleus
Biological process	chromatin remodeling regulation of transcription, DNA-templated regulation of transcription by RNA polymerase II transcription elongation from RNA polymerase II promoter negative regulation of transcription by RNA polymerase II transcription by RNA polymerase II negative regulation of transcription elongation from RNA polymerase II promoter transcription, DNA-templated negative regulation of DNA-templated transcription, elongation positive regulation of DNA-templated transcription, elongation positive regulation of transcription by RNA polymerase II mRNA processing regulation of transcription elongation from RNA polymerase II promoter chromatin organization positive regulation of viral transcription
Sources:Amigo / QuickGO

Orthologs

Species

Human

Mouse

Entrez


6827


20922

Ensembl


n/a


ENSMUSG00000020485

UniProt


P63272


P63271

RefSeq (mRNA)


NM_003168


NM_009296 NM_001355753

RefSeq (protein)


NP_003159


NP_033322 NP_001342682

Location (UCSC)

n/a

Chr 11: 87.63 – 87.63 Mb

PubMed search

^[2]

^[3]

Wikidata

View/Edit Human

View/Edit Mouse

Transcription elongation factor SPT4 is a protein that in humans is encoded by the SUPT4H1 gene.^[4]^[5]

References

^ ^a ^b ^c GRCm38: Ensembl release 89: ENSMUSG00000020485 – Ensembl, May 2017
^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
^ Chiang PW, Wang SQ, Smithivas P, Song WJ, Crombez E, Akhtar A, Im R, Greenfield J, Ramamoorthy S, Van Keuren M, Blackburn CC, Tsai CH, Kurnit DM (Sep 1996). "Isolation and characterization of the human and mouse homologues (SUPT4H and Supt4h) of the yeast SPT4 gene". Genomics. 34 (3): 368–75. doi:10.1006/geno.1996.0299. PMID 8786137.
^ "Entrez Gene: SUPT4H1 suppressor of Ty 4 homolog 1 (S. cerevisiae)".

Hartzog GA, Basrai MA, Ricupero-Hovasse SL, et al. (1996). "Identification and analysis of a functional human homolog of the SPT4 gene of Saccharomyces cerevisiae". Mol. Cell. Biol. 16 (6): 2848–56. doi:10.1128/MCB.16.6.2848. PMC 231277. PMID 8649394.
Wada T, Takagi T, Yamaguchi Y, et al. (1998). "DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs". Genes Dev. 12 (3): 343–56. doi:10.1101/gad.12.3.343. PMC 316480. PMID 9450929.
Wada T, Takagi T, Yamaguchi Y, et al. (1999). "Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro". EMBO J. 17 (24): 7395–403. doi:10.1093/emboj/17.24.7395. PMC 1171084. PMID 9857195.
Yamaguchi Y, Wada T, Watanabe D, et al. (1999). "Structure and function of the human transcription elongation factor DSIF". J. Biol. Chem. 274 (12): 8085–92. doi:10.1074/jbc.274.12.8085. PMID 10075709.
Yamaguchi Y, Takagi T, Wada T, et al. (1999). "NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation". Cell. 97 (1): 41–51. doi:10.1016/S0092-8674(00)80713-8. PMID 10199401. S2CID 16855257.
Kim JB, Yamaguchi Y, Wada T, et al. (1999). "Tat-SF1 Protein Associates with RAP30 and Human SPT5 Proteins". Mol. Cell. Biol. 19 (9): 5960–8. doi:10.1128/mcb.19.9.5960. PMC 84462. PMID 10454543.
Ivanov D, Kwak YT, Guo J, Gaynor RB (2000). "Domains in the SPT5 Protein That Modulate Its Transcriptional Regulatory Properties". Mol. Cell. Biol. 20 (9): 2970–83. doi:10.1128/MCB.20.9.2970-2983.2000. PMC 85557. PMID 10757782.
Wada T, Orphanides G, Hasegawa J, et al. (2000). "FACT relieves DSIF/NELF-mediated inhibition of transcriptional elongation and reveals functional differences between P-TEFb and TFIIH". Mol. Cell. 5 (6): 1067–72. doi:10.1016/S1097-2765(00)80272-5. PMID 10912001.
Ping YH, Rana TM (2001). "DSIF and NELF interact with RNA polymerase II elongation complex and HIV-1 Tat stimulates P-TEFb-mediated phosphorylation of RNA polymerase II and DSIF during transcription elongation". J. Biol. Chem. 276 (16): 12951–8. doi:10.1074/jbc.M006130200. PMID 11112772.
Renner DB, Yamaguchi Y, Wada T, et al. (2001). "A highly purified RNA polymerase II elongation control system". J. Biol. Chem. 276 (45): 42601–9. doi:10.1074/jbc.M104967200. PMID 11553615.
Mo X, Dynan WS (2002). "Subnuclear Localization of Ku Protein: Functional Association with RNA Polymerase II Elongation Sites". Mol. Cell. Biol. 22 (22): 8088–99. doi:10.1128/MCB.22.22.8088-8099.2002. PMC 134733. PMID 12391174.
Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
Narita T, Yamaguchi Y, Yano K, et al. (2003). "Human Transcription Elongation Factor NELF: Identification of Novel Subunits and Reconstitution of the Functionally Active Complex". Mol. Cell. Biol. 23 (6): 1863–73. doi:10.1128/MCB.23.6.1863-1873.2003. PMC 149481. PMID 12612062.
Kim DK, Inukai N, Yamada T, et al. (2004). "Structure-function analysis of human Spt4: evidence that hSpt4 and hSpt5 exert their roles in transcriptional elongation as parts of the DSIF complex". Genes Cells. 8 (4): 371–8. doi:10.1046/j.1365-2443.2003.00638.x. PMID 12653964. S2CID 42100130.
Kwak YT, Guo J, Prajapati S, et al. (2003). "Methylation of SPT5 regulates its interaction with RNA polymerase II and transcriptional elongation properties". Mol. Cell. 11 (4): 1055–66. doi:10.1016/S1097-2765(03)00101-1. PMID 12718890.
Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
Endoh M, Zhu W, Hasegawa J, et al. (2004). "Human Spt6 Stimulates Transcription Elongation by RNA Polymerase II In Vitro". Mol. Cell. Biol. 24 (8): 3324–36. doi:10.1128/MCB.24.8.3324-3336.2004. PMC 381665. PMID 15060154.
Mandal SS, Chu C, Wada T, et al. (2004). "Functional interactions of RNA-capping enzyme with factors that positively and negatively regulate promoter escape by RNA polymerase II". Proc. Natl. Acad. Sci. U.S.A. 101 (20): 7572–7. Bibcode:2004PNAS..101.7572M. doi:10.1073/pnas.0401493101. PMC 419647. PMID 15136722.
Jennings BH, Shah S, Yamaguchi Y, et al. (2005). "Locus-specific requirements for Spt5 in transcriptional activation and repression in Drosophila". Curr. Biol. 14 (18): 1680–4. doi:10.1016/j.cub.2004.08.066. PMID 15380072. S2CID 18780732.